That said, a few thoughts:
1. .claude/settings.local.json is meant to stay local. This is not a file you should check into source control. We automatically gitignore it when Claude creates the file, so in this case the files were manually created and checked in (docs: https://code.claude.com/docs/en/settings)
2. Permission rules are old hat. Everyone should be using auto mode instead. It is safer and also does not require manually maintaining finicky allow/deny lists. Auto mode is enabled by default and is included for free in all plans.
3. Regardless of what agent you use, you should have secret scanning enabled. GitHub and other source control hosts offer it. There are many threat models that it protects against and you should absolutely use it if you can. (see https://github.com/security/plans)
[–] doginasuit 6 hours ago
[–] wyager 5 hours ago
[–] doginasuit 5 hours ago
[–] thenewnewguy 5 hours ago
[–] DrewADesign 4 hours ago
[–] doginasuit 3 hours ago
[–] ozozozd 1 hour ago
Why would you use a tool that creates tedious and dangerous work for you?
“Oh you are just supposed to make up for Claude’s errors, and problem solved!”
[–] SV_BubbleTime 4 hours ago
[–] weird-eye-issue 3 hours ago
[–] fwip 48 minutes ago
What do you make of that part of the article?
[–] post-it 2 hours ago
[–] TheRoque 2 hours ago
[–] post-it 1 hour ago
[–] SoftTalker 5 hours ago
[–] Gigachad 2 hours ago
[–] ozozozd 55 minutes ago
Dumb if you don’t turn on auto-mode, dumb if auto-mode commits .claude.
No way to hold it right I guess?
[–] Hizonner 2 hours ago
If it's keys or secrets of any kind, you're even dumber.
If it's in a hidden directory, you are even dumber still.
If you rely on somebody stupid enough to do any of that not to commit it, you have gone beyond the valley of the ultra-dumb. Actually that's true even if you rely on smart people not to do it.
You got your dumb card fully punched when you created `.keys` to begin with.
[–] thatsabadlook 3 hours ago
[–] kstenerud 2 hours ago
I appreciate that you're trying to make Claude Code safer, but the agent really needs to be a lot more restricted in its reach rather than its actions.
The agent should NOT have ANY access to:
- Your ENV
- Your homedir
- The network at large
- ANY other directory on your system
- No, not even your workdir.
The only safe way to use an agent is COMPLETELY isolated by a container or VM, using git semantics to extract its output.
[–] post-it 1 hour ago
[–] kstenerud 1 hour ago
But even that wouldn't be enough because LLMs are nondeterministic, and these kinds of issues are the inevitable results.
Only a mechanical, deterministic failsafe can protect you from it.
[–] what 34 minutes ago
Can you point me to the CC source code?
[–] kstenerud 22 minutes ago
Regardless, It's kinda silly to keep the harness code hidden. There aren't any valuable secrets in there.
But there are rules & procedures to follow, so...
[–] what 14 minutes ago
I also have to trust its “decompilation” is accurate.
[–] kstenerud 6 minutes ago
All hail the agent!
[–] futhey 5 hours ago
Whereas that should probably be default on instead, and this should apply to other known sensitive folders. A simpler system like .agentignore would be even better.
I like auto mode but "the agent supervises itself" is a bad compliance/safety answer on its own.
[–] edg5000 1 hour ago
[–] bluebands 9 hours ago
[–] bcherny 8 hours ago
[–] 80fj0348i 8 hours ago
[–] solyin 5 hours ago
If the command is explained, and then we get a chance to edit it, maybe make the rm -rf into a mv; give us UI to edit the filter being applied. I have no problem hitting "Always allow" so claude can run "git status --flags a/b/c/filename" but as a human, I'd like to be able to edit the permission blanket to be "git status *.
Which I can do manually specify in the config file, but that's annoying. I'm fully capable of opening my terminal app and editing that in vim, but I'd rather not have to. It's like this for every project too. If I start fresh on a new machine, new Claude account, how much do I need to redo?
[–] data-ottawa 1 hour ago
I ended up having to build a full shell argument decomposition and parser, with it I can manage allow list of rich tree structured commands. Centralizing a curated collection of known command structures and their side effects would help a lot. I don't know if Claude does this already, but it doesn't work with things like `gcloud` from my experience, and that has resulted in it slurping secrets (even a partial read I've had to rotate keys for).
Claude uses bigquery in the command line by piping sql files from /tmp into the `bq` command. I had Claude create a hook that expands the SQL file into the permission prompt giving me a real chance to review these, but the TUI truncates long commands with no scroll option. Making that the default behaviour and adding a pager would allow better review of lots of executable scripts.
As long Claude is running as the user's account there's no guarantees. An approach like 1password's `op read` to physically separate secrets from repo read access and printing would he helpful (as in, make sure that no standard key formats can be ingested into the agent's context or logging).
Again, I don't know if any of these are implemented, they've very likely to have been tried by the Claude team, but maybe there's a long shot chance that it helps.
[–] usernomdeguerre 4 hours ago
What if the 'settings' being described here aren't 'project settings' they're 'personal settings for the project'.
I imagine we're following dev ecosystem conventions where everybody puts their tool settings in the project folder so they know where to find it and can share it; but are agent directives like this closer to a 'tool', or closer to a 'contributor'?
If the latter, I wouldn't expect to see "Joe's personal list of naughty and nice commands" in my project files either, certainly not under 'settings'. So just don't put them there.
[–] hologramofham 6 hours ago
$Trillion AI company asking for ideas from the community whose work they hoovered up to make money, ruin an entire industry and make lifetimes of hard earned skill completely valueless in the span of 2 years.
[–] jefftk 5 hours ago
I've always been into programming as a way to solve problems, and that CC allows us to get more done faster is a good thing.
(Up to the point that we get to RSI and extremely powerful models that we don't know how to align or control. Which I think is uncomfortably soon, and so there's a part of me that says "don't make CC better, it's on the critical path to reaching RSI before we're ready")
[–] AspireOne 6 hours ago
> Thinking through what we can do to improve this (ideas welcome)
> $Trillion AI company asking for ideas from the community
indeed always felt very weird to me. $trillion dollar company, with employees bought for as high as $100m, and a whole team/time/internal knowledge/resources/data at their disposal, asking for ideas from random individuals in some public forum? Really? How is this real? Maybe I'm missing the mark here, but it always struck me as odd.
[–] solyin 6 hours ago
[–] cube00 5 hours ago
[–] CamperBob2 4 hours ago
Where do you feel the dollar threshold should be set? At $990,000 per year you still need to listen to users, but at $1,000,000 you are basically King C of Rust Mountain and they are lucky you even let them run your code?
Should RSUs and cash signing bonuses be included in the calculation?
[–] ozozozd 54 minutes ago
Along with how Claude checks it in.
[–] verdverm 2 hours ago
[–] pama 55 minutes ago
[–] piva00 6 hours ago
[–] baconner 4 hours ago
Obviously I've not given this enough design thought, but some means of providing an agent stand in secrets that cannot be used in other contexts would be a big improvement for trustability in things like cc.
[–] pastel8739 2 hours ago
[–] OJFord 6 hours ago
This is an absolutely crazy statement without also bundling proper sandboxing. Nobody should be using auto mode outside of an environment they'd be happy with an 'everything is approved' mode too.
[–] 80fj0348i 8 hours ago
[–] bcherny 8 hours ago
1. After a command is blocked, run /permissions to retry and allow it going forward
2. More deeply configure the classifier itself: https://code.claude.com/docs/en/auto-mode-config
We are working on making these easier and more automated.
[–] kay_o 7 hours ago
[–] awfulneutral 6 hours ago
[–] kay_o 6 hours ago
As I was reading your post I got another approval request that auto-mode did not understand. It was a single Bash call !!23!! lines tall on a retina mac display with six different variables. If anything this is the cause of approval fatigue and auto mode does nothing helpful when this is every call. I also have in my claude.md and global instructions to use tool calls rather than bash grep/cat/find, which are disregarded.
[–] awfulneutral 5 hours ago
[–] kay_o 4 hours ago
[–] dcrazy 6 hours ago
[–] awfulneutral 6 hours ago
[–] written-beyond 8 hours ago
I frequently hit stop on and auto mode task to prevent it from completely flooding my context with some completely unrelated garbage.
Claude really should push away tasks that end up needing more exploration in worker contexts. That way the workers can maintain a sensible amount of context without pushing the main chat into the dumb region.
[–] skeledrew 7 hours ago
[–] bulder 6 hours ago
[–] cerved 6 hours ago
and teach Claude to not git add .
While we're at it, maybe we can also discourage the spurious use of -f for rm -- me personal pet peave
[–] wyager 5 hours ago
It already doesn't do this. This is from users committing the `.claude` directory themselves.
[–] toppa33 4 hours ago
[–] adastra22 2 hours ago
Boris, this comes off as incredibly tone deaf. I don’t want to trust the machine. Trusting the machine is how we end up here. I want to specify exact, deterministic rules that are always followed.
[–] agentdev001 9 hours ago
> "but we are looking into what we can do to prevent this"
I would presume that CC's auto-review of tool-call turns would already solve this >99% of the time, no? From my read, any harness-side deterministic solution here would be saving the user from themselves, which seems like a bad pattern. Somewhat dulling the scalpel in my mind.
[–] bcherny 9 hours ago
[–] agentdev001 8 hours ago
If we've already crossed the bridge to being confident in a non-deterministic reviewer for auto-mode, then, I see no obvious reason as to why we couldn't have the proposed rules be generated by a model. If that were reality, then- all rules placed in settings.local could be secretless, with the confidence of whatever model we tell 'make sure the rule does not contain secret material, consider its destination as potentially public'.
[1] https://code.claude.com/docs/en/permissions#wildcard-pattern... AFAICT, CC will either save off a prefix+wildcard rule, or exact command. Sounds like the former is likely not the cause of the problem here.
[–] skeledrew 7 hours ago
[–] agentdev001 6 hours ago
Otherwise you need a broker that can verify chain of trust for the workload, but that's significantly more complexity if you're pitching a harness/app.
[–] justinclift 3 hours ago
This is bullshit.
I'm one of the people who actually reads the commands, and it doesn't always get stuff right. Please don't delude yourself into thinking "auto mode" is some magic that's the right fit for everyone and every situation.
[–] an0malous 2 hours ago
[–] EugeneOZ 1 hour ago
"you are holding it wrong". No, it's not an excuse. Every mode should work correctly, or should not be selectable.
[–] pastel8739 2 hours ago
The linked docs have an unmistakable slop aura, with the extreme overuse of commas that recent models seem to love. I don't blame people for not referring to them (also because, you know, the whole thing with AI is not having to read, think, or understand for yourself)
[–] knockoff 3 hours ago
[–] jacquesm 3 hours ago
[–] pastel8739 2 hours ago
[–] sensanaty 5 hours ago
Wait, I'm confused. You said yourself coding was solved, surely all you need to do is ask your AI God to come up with an idea, right?
[–] JohnMakin 6 hours ago
This is such a typical blame the user response. You realize if I’m a sysadmin managing fleets of machines, this is an actual wake up in a cold sweat nightmare, even if those files never leave disk? In the past it was less a big deal, way bigger now that your machine god will just download packages and libs that have upstream malware that aggressively scans the file system for stuff like this. guess where it’s going to look first?
have more humility. jesus.
[–] bmitc 4 hours ago
If only tools, including major ones, actually did that. Plenty of the biggest package managers in the world still write API keys in plain text to files. uv and npm are two of them.
[–] Uptrenda 1 hour ago
[–] Hizonner 2 hours ago
Then don't put it in the fucking tree, you idiots.
No, .gitignore is obviously not enough.
[–] bobthegoggles 3 hours ago
[–] stogot 7 hours ago
Use this instead for free https://github.com/awslabs/git-secrets
[–] markasoftware 9 hours ago
[–] Kim_Bruning 5 hours ago
This is called "approval fatigue".
If you think this can't possibly happen to you, you might be in for a surprise. This is an almost textbook case of classic conditioning. You'll find yourself hitting that button faster and faster even while fighting back the urge. So a human is no guaranteed backstop.
This is the scenario that cc auto mode guards against. It cuts down the number of permission prompts to something manageable, so that your fingers don't get trained into clicking 'approve' on 'rm -rf' in the very eyeblink that it appears.
So maybe you feel it doesn't work in theory; but weirdly enough, in practice this particular approach is actually one of the better ones; especially when used in combination with other common sense measures where practical.
[–] markasoftware 4 hours ago
With e.g. VM or container sandboxing, we can say things like "If there are no vulnerabilities in the hypervisor or hardware, then the agent can only access these files, these network services, etc". Auto mode doesn't even try to provide any guarantees, so it's impossible to reason about. It amounts to just using the models judgment about what's "malicious" or not, a definition which is subjective, changes model to model, and can be influenced by attacker input.
Empirical evaluations of how many vulnerabilities manual vs auto mode let through are not super meaningful because auto mode changes dramatically with model releases, the type of task being performed, whether the attacker is making targeted attacks designed to bypass auto mode, etc. A security feature cannot rely on these sorts of factors if it's to be taken seriously.
Further, percent of malicious tool calls accepted is a bad metric. It's like measuring the security of ssh in terms of what percent of unauthenticated logins succeed. The only acceptable value is zero. It's pass/fail, not a spectrum. So both auto and manual mode should fail equally here. Further, the set of malicious tool calls admitted in auto mode may not be a subset of those admitted in manual mode.
[–] Kim_Bruning 4 hours ago
I think I'd trust the current approver with correctly classifying regular semi-interactive LLM behavior fairly well.
However, if we bring in a hostile adversary that calculus changes, and you'd be right to start thinking about other approaches.
On the other hand, transformers are a surprisingly powerful technology, and I wonder if there wouldn't be ways to train one to several nines reliability under adversarial attack. It seems to have worked in at least one case; though I'd be a bit cautious to extend that conclusion to more cases quite yet.
* https://hackmyclaw.com/ ; https://simonwillison.net/2026/Jun/26/hack-my-ai-assistant/
[–] markasoftware 3 hours ago
[–] Kim_Bruning 3 hours ago
You do have a bit of a point, though: I’ve run several models in sandboxes with --dangerously-skip-permissions for months; in the full expectation that I'd need to replace a sandbox once in a while. But so far none of the sandboxes have trashed themselves, yet. knock on wood
Auto mode seems like a lighter-weight version of that: fewer local resources, and it can run on the metal if you need cc to help with system work.
[–] lifeisloving 1 hour ago
This isnt even the main concern with dangerously skip all permission though. There are many. What happens when they get prompt injected on a web page and send someone all their privileged information because you give them free access to the internet.
Using llms like this is dangerous. They will ruin your day eventually.
[–] lifeisloving 1 hour ago
You can not trust that they're RL'd to be safe. Even if it only happens 99.80% of the time (its more than that) it will eventually happen.
Less severe actions will happen even more often. People using llms with their native browser profiles are getting farmed, hard.
Llms are highly dangerous in terms of security, but they're being marketed as highly intelligent tools that everyone should use. Its really mind blowing.
[–] zahlman 1 hour ago
[–] 40four 1 hour ago
But this is the downside. It might be fine 99% of the time, but 1% of the time you get a critical secret published to GitHub, even after human review.
Is this even worse than what us humans did on our own before LLMs? I’m not sure. It’s not like secrets never got accidentally committed before, it just illustrates the new paradigm we’re working in.
Either you let your agents run wild, and you cross your fingers that they don’t do anything bad, or you need to accept that your new job is to be an agent babysitter, and audit every command.
[–] bcherny 8 hours ago
[–] bulder 7 hours ago
Many of the problems when it comes to the manual approval feel like they stem from the expectation of using auto mode in the first place. After all, what's the point of improving the manual approval and safety matching if auto mode is the end all be all, and what's the point of training the model to output commands in a manner that can be parsed by a human if auto mode is always meant to be used? It's very rare for me to not see "command could not be statically analyzed", because the model keeps outputting bash golf.
[–] smallnamespace 6 hours ago
That is not the niche case, that's the dominant use of models.
It would be helpful to distinguish between your own opinion on how models ought to be used, compared to how others actually use models.
[–] RHSeeger 6 hours ago
It would be helpful to distinguish between your own opinion on how models ought to be used, compared to how others actually use models.
[–] zahlman 1 hour ago
And if everyone else jumped off a bridge, I mean, used raw interpolation for SQL queries, would you do it too?
[–] wongarsu 5 hours ago
However I do share your desire for a better manual mode. Auto-mode is both sometimes surprisingly lax, and sometimes too restrictive. Maybe manual mode should inject a reminder "keep your commands as simple one-liners", the same way plan mode injects a reminder that you are in plan mode and don't want any code changes
[–] ceejayoz 8 hours ago
[–] gsnedders 8 hours ago
As it says:
> 5% allow any shell command outright, and another 43% have interpreter rules like Bash(python:*) or Bash(node:*) that are essentially equivalent in practice
Claude Code never should have prompted to always allow Bash(python:*) or Bash(node:*) — that’s clearly a bad idea, and Anthropic know that (given the references in the article!).
Of course, Bash(python a.py) still isn’t safe if you also allow Write(a.py), because you may as well allow Bash(python:*) at that point, and that’s often practically what people want (“I want to both make edits to the source and then run the test suite”). So maybe the whole permission system is broken to start with — and the actual answer is leaning more heavily on fine-grained sandboxing.
You also, as the article rightfully points out, run into permission fatigue and users blindly hitting allow.
I do still wish you could do more with hooks — outside of auto, I might want to allow a given command via a hook if Claude Code has read access to given file, but there’s no way to query if a given path allows/denies read/write.
[–] bcherny 8 hours ago
Ultimately, the threat model here is: human has to approve a lot of commands, so gets tired and accidentally approves a command they shouldn’t have. We spent a significant amount of effort to build a richer permission system, allow configuration at multiple levels, use static analysis to detect dangerous and safe commands, monitor the model to detect and block prompt injection at the inference layer, etc. Some of these components we rewrote and red teamed dozens of times. Our conclusion was that despite all of this work, in practice the threat model is that human attention is limited and that that a different approach performs an order of magnitude better in practice.
[–] joombaga 5 hours ago
[–] adastra22 2 hours ago
[–] aftbit 7 hours ago
[–] bcherny 6 hours ago
[–] Kim_Bruning 5 hours ago
With SOTA agents that’s a real bind, because they’re very likely to find those gaps. Whether they exploit them, close them, or leave them alone then becomes a prompting challenge yet again.
I don't think this means don't sandbox at all. You can prevent a lot of small and medium accidents by locking down or gating access to hidden files, ssh, sudo, etc.
But your sandbox can never be the whole story.
[–] kragen 7 hours ago
Speaking of really significant things being at risk, it's pretty infuriating that the web-chat Incognito mode can't write and test code locally, and neither the non-Incognito web-chat nor the local Claude Code client can be shielded from the knowledge of my email address and my geolocation. (Even the Incognito mode knows my geolocation.) This gives users no alternative but to put privacy-sensitive information at the disposal of Claude Code, which is far too unreliable to be entrusted with it. It's tempting to attribute this to Anthropic's corporate DNA valuing users' interests at a very low level, but conceivably it's just an oversight, and if I mention it here, it will be corrected in a month or two?
Currently, my assessment is that Claude Code, and in particular the Opus 5.5 model, is head and shoulders above the competition in software development capabilities. Nothing else is even close. But I've seen several small signs like this which suggest that Anthropic, as a company, is maliciously misaligned. So, if Grok, Qwen, GLM, or Astra starts to come anywhere close to being competitive, I'll switch as soon as I can. I imagine that most of your users feel the same way.
[–] wonnage 7 hours ago
[–] 1659447091 4 hours ago
You can make a script for the PreToolUse hook that can do that. I use a command gate script that parses input for doing that exactly, allowing/denying actions based on tool use + paths -- it started out as a hook to prevent claude from polluting my clojure projects/filesystem with python in sneaky ways. Babashka works really well here
[–] rbehrends 6 hours ago
sed -n 1,30p src/vm/wren_vm.c && sed -n 310,350p src/vm/wren_vm.c && sed -n 560,600p src/vm/wren_vm.c && sed -n 740,775p src/vm/wren_vm.c && sed -n 40,70p src/vm/wren_common.h && cat util/wren_to_c_string.py | head -80 && ls test/random doc/site doc/site/modules doc/site/modules/random 2>/dev/null; cat projects/premake/premake5.lua | head -80; cat util/generate_projects.py
After ten or more of these, you're going to get hit by permission fatigue, and then, yes, manual review becomes too error-prone to use safely.
The irony is that Claude is regularly ignoring its existing Read/Write/Edit tools that could make everything more readable.
Other models/harnesses have their own problems, but Claude Code is one of the worst for manual approval.
You can get manual approval to work reasonably well if you give the model a reasonable set of tools (I have literally written my own MCP servers to cover gaps in existing harnesses) where you can then write rules for the vast majority of safe cases.
For example, I have a stdio MCP server that allows models to inspect crates under ~/.cargo/registry/src (paired with the existing query-crates MCP server). It provides read-only operations limited to crate data, so I can pretty safely auto-approve everything in there. With the right setup, including a sandbox, you only ever have to manually approve something once in a while and usually with delimited scope, avoiding permission fatigue.
[–] fwip 1 hour ago
1) edit a file with sed, 2) try to write it with its regular tool 3) get blocked because sed changed the file 4) read the file with tool 5) edit with sed again.
Would be nice if it felt like real people were developing Claude Code, instead of chasing after another half-baked idea Claude came up with.
[–] greatgib 5 hours ago
- Yes, but only one time, you will have to manually approve next time
- Enable auto mode and stop worrying
- No
Nothing to save this command or part of it to the manual approve list. So will be requested again 100x times.
[–] bcherny 8 hours ago
[–] ceejayoz 7 hours ago
[–] cozzyd 8 hours ago
[–] AspireOne 6 hours ago
[–] j45 3 hours ago
[–] eterm 8 hours ago
[–] knollimar 7 hours ago
[–] markasoftware 7 hours ago
[–] rectang 4 hours ago
Ideally I would never use Claude at all outside a disposable container, even on a box with no sensitive information and with the sandbox enabled. It's like having an attacker breach your system — you don't know what it did.
[–] RossBencina 59 minutes ago
"Measuring the Permission Gate: A Stress-Test Evaluation of Claude Code's Auto Mode" https://arxiv.org/abs/2604.04978
(Shared by hkalbert71 the other day in: https://news.ycombinator.com/item?id=50387838)
[–] wyager 7 hours ago